Thursday, December 23, 2010

1st Birthday Invitation Funny Wording

SimplyScience Contest for grades 10 and 11th degree




Open to classes of 10 and 11th level (new numbering) it is to carry out three experiments on DNA, microscopy of plant tissues and biochemistry of yeast, then Students will analyze them in creative ways. The teacher must accompany "coach" but not give answers. There should be 3 lessons from experience. The project is conducted in English. The detail is in the message below which was sent to school principals-ordinator. Attached the letter to teachers. This contest is organized by
SimplyScience
is an initiative of the ICMS Chemie Pharma Schweiz (Swiss Society of Chemical Industry) supported by the Confederation
see here
There will be a selection of top ten classes and prices include a trip to San Francisco for a "Science & Cultural Week."





Fig 1:
www.simplyscience.ch is, an initiative of the Swiss Society of Chemical Industry (
www.sgci.ch
) .. [

img]



Wednesday, December 22, 2010

How To Congratulate Someone Who Has Had A Baby

Monkey Man differs by 1.3% but each human is different than 12%?!

concours science on the move Man differs from the "monkey" of 1.3%, while each human differs by 12%!? Many figures on the difference between humans and chimps appear to move but contradictory. Calculated by different methods, they have meaning only knowledge of how they are established. Was used in the past immunological similarity, hybridization of DNA molecules, most recently the identity of particular sequences (SNP) and the comparison base to base sequences or whole genomes. And the list is certainly not complete. Obviously these methods give different results each time. There are sometimes an entire gene as different from one base is different, while other methods compare one by one 3 billion bases of our genome with 3 billion of the chimpanzee. Some account for a shift of a sequence as many differences, others do not detect this type of change. Give a single digit is unscientific and misleading. It is unsettling to students compare to other figures in the press, TV and internet. This is likely to discredit the teacher if a figure just as absolute and true. It is also be open to criticism from those who want to believe a single truth and simple: they are happy to show different figures as inconsistencies. Why so much interest for this difference? man has long wondered about the disturbing similarities with the "monkey" (I question whether a term that includes very different animals from the size of a cat to that of the gorilla ) including other primates, especially the hominids ( UniProt ) (tailless apes) and especially the chimpanzee (Pan troglodytes ). One can not help but see in his facial expressions, appearance, behavior social similarities touching. [ img] Source: Gould, J., et al (1994) File "ape" over hominidés.com "My God! Thus, man descended from monkeys. Provided that it is not true, but if it was, pray that it does not know!" Said Lady Worcester

would by reading the work of Darwin. (This quote

appears in different forms, I pulled this quote from Pascal Picq
here


)

At the turn of the conversation on these similarities and differences, often comes the proverb "Shoo natural change their spots" in reference to certain behaviors, socially unacceptable, who showed an origin in chimpanzees. Although this is not the correct meaning of the proverb is almost as if our fears that our emotions and take us beyond the control is crystallized on this being so close and yet different, as F. Terrasson (1997) describes in "The fear of nature." Why we so scared of being next of kin of a chimpanzee? That's what one of many Desmond and Ramona Morris studied in "Men and Apes." They discussed the monkeys sacred, representations of monkeys as mad or fishermen, as lovers and as intelligent animals. For (Geets 2003), behind the fear of difference lies in the fact that fear is not so different ... Leave this question for now to focus on these individual differences ... Old methods One of the first measurement methods that have dug up my research summary is immune. This much we placed a 15% difference of our cousin the chimpanzee. "The reaction to the precipitin shows that 85% of plasma proteins from chimpanzee are homologous to those of man. "Miram, W., & Scharf, KH (1998). biology from molecules to ecosystems. Lausanne: LEP Leisure and pedagogy. p. 433 [ img] Source : Vogel et al. (1970) Here we speak only of blood proteins and compared their affinity antibodies. Figure 2 suggests that peer wants to say here that the protein of the chimpanzee is agglutinated by antibodies against human proteins. So they have the same epitope.
DNA-DNA hybridization
Atlas of Biology (Vogel, G., et al., 1970) also cites this method p. 511 and asserts that the hybridization between humans and rhesus monkeys is 85%.

The first results by sequencing
Since sequencing is available and the cost down very quickly, new ways of measuring similarities and differences appear. For a long time we saw a figure close to 1.5% in many educational references.


example Miram-Scharf talks about 1.2% during that Watson, JD, et al (1994) Online said here P. 446 "The genomes of humans and chimpanzees differ in fact only 1.6%"

The way to measure is not described, but probably base substitutions in selected genes we had available at the time, by aligning short sequences. This measure does not take into account the differences resulting from the displacement of the inversion or duplication of sequences, because it seeks, in short - the alignment then the differences on these small aligned sequences.
Understanding alignment to find evidence of evolution is crucial for teachers said Profs. Brigitte and Denis Duboule Gaillot at a conference for teachers of biology in the spring of 2009.


Scenario students to make an alignment of human and chimpanzee protein
( Scenario 5: Evolution of insulin but can be used with any other protein)
Genomics enables new comparisons
Since 2001 (International Human Genome Sequencing Consortium. 2001

here )

the human genome is fully available, and since 2005 that the chimpanzee / The Chimpanzee Sequencing and Analysis Consortium. 2005)
here

We learn that differences in terms of base substitutions are 1% and rearrangements, duplications and travel is our genome sequences diverge by 2.7% more. It is also true of about 1% or 3.7% ... [
img] Source: For Science No. 57

  • Nature has a special issue
Nature
special chimpanzee

and provides a Web folder

focu "The chimpanzee genome They have clarified the problem nicely:" We share More Than 98% of Our DNA and Almost all of Our Closest Living With Our Genes on, The chimpanzee. "We share almost 98% of our DNA and almost all our genes with our closest relative today: the chimpanzee.

There is a
interactive animation that compares our two species in several ways: if you click on the shoulder of the chimpanzee highest one finds indications of differences genetic. " It Is Often Said That The Two species are 98.5% the same, in terms of single-letter DNA code In The Exchange. Goal Of The chimpanzee genome mapping shows There Are Further differences in how DNA chunks are duplicated and rearranged. Thesis differences due to divergent sequences o genome by 2.7%, while single-letter substitutions Another add about 1% of difference. "
The NCBI maintains a portal chimpanzee
Choose one chromosome per ex. 2, human, below it says the number of genes (Genes are
    Total Chromosome:
  • 2346) compared chromosome has chromosome is possible.
  • An article by Pollard, KS, et al. (2006) here
  • a comparison of the entire human genome and the chimpanzee (see Bio-Hills of May 5, 2007 "The chimpanzee
      more evolved than us?
        ). They searched areas of our DNA that have more variety here than in chimpanzees (compared to another genome). They found very few differences in the genes, but in the non-coding DNA they have found Human Accelerated Regions (MDT), one of which seemed to have changed particularly quickly: called HAR1F, it is expressed between the 9th and 17th week of pregnancy-critical period where neurons form and migrate in a region brain (Cajal-Retzius), which determines the layered structure of the brain. It is tempting to imagine that this RNA would have a regulatory role, and activates many other genes, ensuring the further development of our brain and ... we would be reassured about the reality of differences with the "monkey"!
      • We see that the former focus on
      • genes, which ignored the rest of the DNA, misses important differences ...
      • The difference between two humans: 0.1% or 12%? Bill Clinton repeated in 2001 with the provision that the Human Genome " Humans are all, Disrespect of race, 99.9% Genetically The Same.
        "
    here is also that at the Cite des Sciences in Paris it is stated:
  • " surprising result: between two individuals. there are only 0.1% difference! Briefly, a needle in a haystack that continues to sharpen the curiosity of researchers ... "While in Science et Vie (2008) ( intranet.jpg)
  • we read that" From an individual the other genes differ by 12%.
  • hard to reconcile! Here is the number of genes that have at least one tiny difference: 3,000 genes differ by at least one base between two people nearly 12% of the approximately 21,000 genes ( that figure also change depending on how you measure, not bother me with that is an order of magnitude )
  • Thus 0.1 and 12% are equally true (currently ...) but measured differently.


Check Hayden, Erika (2007)

here reports that these figures do not account for significant rearrangements: travel, inversions and other réarrangments, which seem to affect much of our genome (one author mentioned 10 % in 2007). An Inuit and I differ by 1% but I have only 50% in common with my own daughter? In the excellent site
thenakedscientist found a nice problem situation to begin an investigation by the students: If
have a human I share 98% of my genes and chimpanzee With A 60% of my genes With A Banana, how I come only share 50% of my genes with My own daughter?


For the figure of 50% between father and daughter, we are interested in information flow at lineage. In fact nobody has said that 50% difference between parent and child: When we say that "we share 50% of our genes" with our closest relatives, we do not say that the other 50 % are different, it just says they are from the other parent. We should say that 50% of the information on our genes come from each parent. We talk about the source of information: either the father or the mother, which was inherited genetic information. Indeed, each chromosome is copied from the genome of the father or mother in the gamete and the cells of the child and each is of paternal or maternal in equal proportions. But most often , often the gene of the father is identical to that of the mother. Your two copies of the gene for insulin are probably identical, but as one comes from your father and the other from your mother, they are counted different source and are part of the 50% shown.
The most recent figures on human diversity ...



An ongoing project The 1000 Genomes Project Consortium. (2010) miles genomes sequenced wants to take the measure of the diversity of our species. They have already analyzed after "rapid sequencing (
low coverage ) 179 individuals from four distinct populations by sequencing and very thorough (
high coverage) two trios: mother-father-child; They still have sequenced 8140 genes exons covering 906 697 people.

Fig 5:



e project The 1000 Genomes Project will sequence to compare 1000 Gen


People and, letters of A T C G omes whole .. [ img] Source: The 1000 Genomes Project
. The 1000 Genomes Project offers tutorials and videos here
Comment: Human genome: Genomes By The Thousand , 1026-1027 (2010) in Nature The 1000 Genomes Project Consortium. (2010) and a News & Views of R. Nielsen here gives a summary of the very many numbers that may affect the education, here's a selection: On average each person has approximately 250 to 300 variants " loss-of-function (which produce a nonfunctional protein) and 50 to 100 variants known to be involved in hereditary diseases. We live pretty well this situation (healthy carriers), because we are heterozygous for these genes and these diseases are recessive (or there are redundant genes). Each individual would still be homozygous for 30 mutations linked to genetic diseases. From the two trios, they estimated the mutation rate in the germ line (eggs, sperm) for base substitutions ( rate of de novo germline mutations base substitution) at about 10 -8 per base pair per generation. That would still 30 mutations per generation for our genome of 3 billion (10 9 ) if I'm not mistaken ... (thank you to those who have pointed out the error!) Their results here indicate that an individual typically differs from the reference sequence ( here
) by:
220-250 deletions that shift the reading frame. 1000 genomes So this project is a little better characterize this human diversity and distinguish more meanings in this uncultivated percent ...
Conclusion The contrast of some of these figures could be good primers for the problem situation: they challenge students, raise questions, reveal some obstacles ... ( intranet.pdf
)
We also see a figure in science-has meaning only in relation a measurement method. It is therefore difficult, but important to learn to critically interpret information, even that of Nature or Science ...
"This is a

very delicate time, and a dangerous time, as people start to Come Up With Things That The General Public, The Media Gold, Gold Various groups Might misinterpret," Sabeti says. "I like the Fact That, so far, weekends find the Evidence for Natural Selection in Humans Is Only Skin Deep."
Check Hayden, Erika (2007)

And finally these examples illustrate that knowledge is scientific only if it clearly establishes how the data support the assertion. Sources

Check Hayden, Erika, (2007), So similar, yet so different. Nature News 17 October 2007
Human Genome: Genomes By The Thousand  
Pollard, K. S., Salama, S. R., Lambert, N., Lambot, M.-A., Coppens, S., Pedersen, J. S., et al. (2006). An RNA gene expressed during cortical development evolved rapidly in humans . Nature, 443(7108), 167-172.
Skipper,
  • Magdalena
    . (20190) Nature Podcast
  • 28th October

  • Terrasson, F. (1997). La peur de la nature: Sang de la terre.
  • doi :10.1038/nature05113
  • The 1000 Genomes Project Consortium. (2010). A map of human genome variation from population-scale sequencing. Nature, 467(7319), 1061-1073.
  • The Chimpanzee Sequencing
  • and Analysis Consortium. (2005). Initial chimpanzee genome sequence and Of The Comparison with the Human Genome
  • . Nature, 437 (7055), 69-87.
VB (2008) On the other individual genes differ by 12% "Science and Life in November 2008 approx.
intranet.jpg

Vogel, G., & Angemann, H. (1970) . Atlas of Biology (Mr. Ricard, Trans).. Paris: Stock

experimental blog about the evolution of biology. To explore how we could keep alive the link between research and teaching.

Saturday, December 18, 2010

Finger Boards Fo Sale






★ (`'• .¸---------(`' .¸¤¸. • • •'')--------¸.'') ★
«'¨` Member of the Club Faces Without Ages' ¨ `»
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Wednesday, December 8, 2010

Convert To Swivel Rocker

foams are planning further their spores through a "Smoke ring"! International Week


Spores out in the wind with a vortex
A study reveals that some Sphagnum moss
project their spores like a cannon - the accelerating 32'000g - and operate a aerodynamic phenomenon that prevails at 15-20 cm, much higher than expected: the air friction would stop after a few millimeters! A capsule which contracts as it dries, a seal that grants the crucial moment, and a vortex ring - a bit like smoke rings (vortex) - allow spores to reach the layers of air above where wind can carry them further and ensure the dissemination effective and has allowed these foams through the upheavals of many millions of years.


Dissemination of spores ... a problem!

We know how the spread of spores is a problem for foam: the layer of air at ground level is almost immobile, even when it's windy. It feels good when lying in the grass one day kiss the wind decreases near the ground. For mosses that live in the first millimeters, send spores as high as possible for them to find a place off to develop them is decisive. Foams are the current descendants of those who had adaptations allowing them to continue to live elsewhere when their environment has ceased to be viable!


  • Fig 1: The sporangium rises above the rest of the foam. [Img
  • ] Source: F. Lombard
  • For the genus Sphagnum (285 species), Whitaker, DL, & Edwards, J. (2010) published interesting figures ( Extracts intranet.pdf ) which show the extent of the problem. Spores (22 to 45 microns) fall at a speed 0.5 to 2cm / s: a slightly turbulent wind just have to keep them in the air. To achieve these carriers winds, turbulent (above 10 cm in height) must be released spores in height - is what allows the lance-shaped (see Figure 1) of many sporangia. But it does a cm - and the project gives off much more likely to spread, which is what the article discusses. Air is a major barrier for spores Because compared to our size decreases the surface only to the square and volume - hence their weight - reduces the cube, tiny objects are much more subject to air friction. The friction in the air is so huge for the spores, because it is linked to the surface (disproportionately large compared to the weight for us). Relative to our size it is as if the air was really tacky. Or, in other words, it is like trying to play football or tennis with balloons: even going at full speed, it slows down very quickly and fall gently. Physicists speak of low Reynolds number: the viscous forces are larger than those of inertia (McMahon, TA, et al., 1983)
  • . Thus, the friction should limit the distance that can reach spores less than one cm. See fig 2. blue and green.
  • Fig 2: A, B
  • Fig 3: The sporangium narrows and compresses the air in the bottom of the sporangium
  • C Distance traveled by the ballistic calculations in still air (blue and green) and the observed distance of the cloud points red triangles and width. D
  • Video ultra-fast (20,000 fps) of the massive release of spores, which produces a vortex ring.
  • [
  • img] Source: Whitaker, DL, & Edwards, J. (2010)

  • An American physicist and a biologist Whitaker, DL, & Edwards, J. (2010) have joined forces to publish an article in Science
: predictions by the simple ballistic observations encounter and highlight the effect of a vortex. The sporangium

Fig 3A shrinks as it dries and compresses air in the lower part (Fig. 3B) at pressures of 200 to 500 kPa. In the same issue Johan L. van Leeuwen (2010) describes how the pressure finally blow the lid releasing spores (20.000 to 240.000) that propels air pressure, as in a (tiny) gun, with a release rate of 16 ± 7 ms -1

and an average height of 114 ± 9 mm. The acceleration is 32'00g. It is the spore!

(ok it is not terrible, but I could not pass up this opportunity to place ...)


To get an idea an acceleration of 2g is reached by sports cars and F1 fighter jets inflict some 6g their drivers, but supported by special combinations ... Spores isolated launched with an initial speed of 13 ms -1 not culminate theoretically only 2 to 7 mm in less than 0.5 ms. While researchers have observed (Fig. 4B right) in 5 ms, they travel a distance of more than 40 mm at the end of which they are still moving at 3 ms -1
Fig 4: Sporangia of Sphagnum fimbriatum
(B)
capsule

ball becomes cylindrical drying. The rupture of the membrane releases the spores and the pressure of air propels the spores as in a barrel. The jet of air spores and rolls up Into a turbulent vortex ring spores That Carries up to 15 to 20 cm. (C) Air pressure (above ambient) Rises NONLIN. [Img
] Source N. KEVITIYAGALA / SCIENCE La distance parcourue selon les calculs balistiques en air calme (bleu et vert) et la distance observée du nuage points rouges et sa largeur triangles. The authors explain that the vortex caused by the massive release of spores - and air - changes the aerodynamic system and product a vortex - a vortex ring - (see Figure 5) that accompanies the movement of spores to heights much higher.
Videos of the steps in this release are available in the Supporting Online Material here Unique in plants? vortices are produced by the jellyfish and octopus for propulsion and the authors note that this is perhaps the first time we described for plants. Such dispersal facilitated by the vortex may explain in part the success of Sphagnum , who survived the emergence of plants Vascular. Let me note that in some ways the current foams have a relatively longer duration than the ferns, conifers and flowering plants. You could say so provocative that they are "more advanced" than the ferns or flowering plants ... Just to show that any attempt to see evolution as a straight line is inconsistent. Aerodynamics Pollen dispersal agree, but the concentration? The question of aerodynamics of pollen dispersal is aided in gymnosperms and angiosperms by tree size, but at the other end of the journey to the grain of pollen, raises the question of the opposite gamete encounter - especially the likelihood of this meeting. Especially as the micropyle seems hidden in the scales. Again (KJ Niklas 1987) shows (see Figure 6) that ensure the effective vortex pollen concentration just on the micropyle of the egg-like when you stir a cup of tea and sugar is concentrated at the bottom and the center of the cup. Or as food particles in the gills of mussels probably! One might wonder if the inventor of the bagless Dyson which operates similar eddies merely copy - or reinvent - what conifers are over millions of years ... [img intranet] and [img intranet]
Fig 6: Aerodynamics of pollination facilitates the meeting of gametes. Source: Niklas KJ (1987)
Again the hazards and selection have produced modifications to the limits and sometimes appear to exceed the laws of physics and probability. Sources
MacMahon, TA & Bonner, JT (1983). It size and life . Scientific American Books. 
Niklas K. J.. (1987). Aerodynamics of wind pollination. Scientific American July: 90-95. Trad : Pour la Science (1987) septembre  Extraits intranet.pdf Spore discharge.,,(A) Spore capsule of Sphagnum fimbriatum on a short stalk. (B) The wet spherical capsule becomes cylindrical by drying. Quick release of the lid triggers spore discharge by internal air pressure. The jet of spores and air rolls up into a turbulent ring vortex that carries spores up to 15 to 20 cm. (C) Air pressure (above ambient) rises nonlinearly with the volume fraction of spores (ηsc). Initial spore acceleration is highest for both low and high ηsc because of low spore mass or high pressure. Vspores/Vwall is the spore/wall volume ratio. Vertical tan line corresponds to the predicted optimum in spore content, similar to observed ηsc (2–4). van Leeuwen, J. L. (2010). Launched at 36,000g.Science, 329(5990), 395-396. doi: 10.1126/science.1193047 Whitaker, D. L., & Edwards, J. (2010). Sphagnum Moss Disperses Spores with Vortex Rings. Science, 329(5990), 406. doi : 10.1126/science.1190179   about the evolution of biology. To explore how we could keep alive the link between research and teaching.